Researchers have developed a unified, data-driven computational approach to infer and reveal connections among cells in biological and chemical oscillatory networks. If you've ever experienced jet lag, you are familiar with your circadian rhythm, which manages nearly all aspects of metabolism, from sleep-wake cycles to body temperature to digestion.
Every cell in the body has a circadian clock, but researchers were unclear about how networks of cells connect with each other over time and how those time-varying connections impact network functions.
Researchers developed a unified, data-driven computational approach to infer and reveal these connections in biological and chemical oscillatory networks, known as the topology of these complex networks, based on their time-series data. The study was published in PNAS.
Once they establish the topology, they can infer how the agents, or cells, in the network work together in synchrony, an important state for the brain. Abnormal synchrony has been linked to a variety of brain disorders, such as epilepsy, Alzheimer's disease, and Parkinson's disease.
Infer Connections Of Networks
They developed an algorithm, called the ICON (infer connections of networks) method, that shows for the first time the strength of these connections over time. Previously, researchers could only determine whether a connection existed between networks.
They first tested their method on a simulated network of different sizes they created. Next, they tested the method on a network of oscillators populations of dynamic units that repeatedly fire together, go silent, then fire together again created in the lab by Istvan Kiss, professor of chemistry at Saint Louis University.
When they applied Li's algorithm to the network of interactions among the synthetic oscillators, the results matched what Kiss had determined through his experiments, finding the same connections in a network of 15 chemical oscillators. Such prediction of this dynamic topology was not previously possible, the researchers said.
This method has a variety of applications beyond cell networks. This lays the foundation to analyze complex real-world networks of tremendous sizes, such as transportation, internet, power grids, and social networks.
They measured the circadian rhythm from 541 cells from the right and left sides of the mouse brain, then asked Li to estimate how these connections changed over time something that hadn't been done in the biology field.
The connection at one time may be strong, but at another time it may be stronger or weaker, so we can use this data to recover the functional connectivity. If we know this, then we know the network, then we can do more study and investigate over time whether this network will be synchronized or whether specific dynamic patterns will emerge.
They hope that ICON can map out connections and describe the interactions, such as attraction versus repulsion, of cells at different developmental stages so we can understand more about how circadian systems assemble after birth, adapt to challenges such as winter or summer, and fail to coordinate during stressors such as shift work or flying across multiple time zones.
In another experiment, they tested the method on seven groups of five mice who were housed together for a period as social networks. In the end, they found that four of the groups of mice had social synchronization because they had the same body temperatures at the end of their time together. Three groups did not have the same body temperatures and were not socially synchronized.